https://w3id.org/omop/ontology/source_value
For Provider: Use this field to link back to providers in the source data. This is typically used for error checking of ETL logic. Some use cases require the ability to link back to providers in the source data. This field allows for the storing of the provider identifier as it appears in the source. - For Note: The source value mapped to the NOTE_CLASS_CONCEPT_ID. - For Visit Detail: This field houses the verbatim value from the source data representing the kind of visit detail that took place (inpatient, outpatient, emergency, etc.) If there is information about the kind of visit detail in the source data that value should be stored here. If a visit is an amalgamation of visits from the source then use a hierarchy to choose the VISIT_DETAIL_SOURCE_VALUE, such as IP -> ER-> OP. This should line up with the logic chosen to determine how visits are created. - For Condition Occurrence: This field houses the verbatim value from the source data representing the condition that occurred. For example, this could be an ICD10 or Read code. This code is mapped to a Standard Condition Concept in the Standardized Vocabularies and the original code is stored here for reference. - For Location: Put the verbatim value for the location here, as it shows up in the source. - For Care Site: The identifier of the care_site as it appears in the source data. This could be an identifier separate from the name of the care_site. - For Procedure Occurrence: This field houses the verbatim value from the source data representing the procedure that occurred. For example, this could be an CPT4 or OPCS4 code. Use this value to look up the source concept id and then map the source concept id to a standard concept id. - For Visit Occurrence: This field houses the verbatim value from the source data representing the kind of visit that took place (inpatient, outpatient, emergency, etc.) If there is information about the kind of visit in the source data that value should be stored here. If a visit is an amalgamation of visits from the source then use a hierarchy to choose the visit source value, such as IP -> ER-> OP. This should line up with the logic chosen to determine how visits are created. - For Drug Exposure: This field houses the verbatim value from the source data representing the drug exposure that occurred. For example, this could be an NDC or Gemscript code. This code is mapped to a Standard Drug Concept in the Standardized Vocabularies and the original code is stored here for reference. - For Device Exposure: This field houses the verbatim value from the source data representing the device exposure that occurred. For example, this could be an NDC or Gemscript code. This code is mapped to a Standard Device Concept in the Standardized Vocabularies and the original code is stored here for reference. - For Measurement: This field contains the exact value from the source data that represents the measurement that occurred. This value corresponds to a standardized CONCEPT_ID found in MEASUREMENT_CONCEPT_ID and in the 'Measurement' domain within the Standardized Vocabularies. The original code is retained here for reference purposes. - For Observation: This field houses the verbatim value from the source data representing the Observation that occurred. For example, this could be an ICD10 or Read code. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference. - For Person: Use this field to link back to persons in the source data. This is typically used for error checking of ETL logic. Some use cases require the ability to link back to persons in the source data. This field allows for the storing of the person value as it appears in the source. This field is not required but strongly recommended.
| DOMAIN | PROPERTY | RANGE |
|---|---|---|
| Blank node (see implementation) | Source value | string |
@prefix omop: <https://w3id.org/omop/ontology/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
omop:source_value a owl:DatatypeProperty,
owl:FunctionalProperty ;
rdfs:label "Source value"^^xsd:string ;
rdfs:comment "For Care Site: The identifier of the care_site as it appears in the source data. This could be an identifier separate from the name of the care_site."@en,
"For Condition Occurrence: This field houses the verbatim value from the source data representing the condition that occurred. For example, this could be an ICD10 or Read code. This code is mapped to a Standard Condition Concept in the Standardized Vocabularies and the original code is stored here for reference."@en,
"For Device Exposure: This field houses the verbatim value from the source data representing the device exposure that occurred. For example, this could be an NDC or Gemscript code. This code is mapped to a Standard Device Concept in the Standardized Vocabularies and the original code is stored here for reference."@en,
"For Drug Exposure: This field houses the verbatim value from the source data representing the drug exposure that occurred. For example, this could be an NDC or Gemscript code. This code is mapped to a Standard Drug Concept in the Standardized Vocabularies and the original code is stored here for reference."@en,
"For Location: Put the verbatim value for the location here, as it shows up in the source."@en,
"For Measurement: This field contains the exact value from the source data that represents the measurement that occurred. This value corresponds to a standardized CONCEPT_ID found in MEASUREMENT_CONCEPT_ID and in the 'Measurement' domain within the Standardized Vocabularies. The original code is retained here for reference purposes."@en,
"For Note: The source value mapped to the NOTE_CLASS_CONCEPT_ID."@en,
"For Observation: This field houses the verbatim value from the source data representing the Observation that occurred. For example, this could be an ICD10 or Read code. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference."@en,
"For Person: Use this field to link back to persons in the source data. This is typically used for error checking of ETL logic. Some use cases require the ability to link back to persons in the source data. This field allows for the storing of the person value as it appears in the source. This field is not required but strongly recommended."@en,
"For Procedure Occurrence: This field houses the verbatim value from the source data representing the procedure that occurred. For example, this could be an CPT4 or OPCS4 code. Use this value to look up the source concept id and then map the source concept id to a standard concept id."@en,
"For Provider: Use this field to link back to providers in the source data. This is typically used for error checking of ETL logic. Some use cases require the ability to link back to providers in the source data. This field allows for the storing of the provider identifier as it appears in the source."@en,
"For Visit Detail: This field houses the verbatim value from the source data representing the kind of visit detail that took place (inpatient, outpatient, emergency, etc.) If there is information about the kind of visit detail in the source data that value should be stored here. If a visit is an amalgamation of visits from the source then use a hierarchy to choose the VISIT_DETAIL_SOURCE_VALUE, such as IP -> ER-> OP. This should line up with the logic chosen to determine how visits are created."@en,
"For Visit Occurrence: This field houses the verbatim value from the source data representing the kind of visit that took place (inpatient, outpatient, emergency, etc.) If there is information about the kind of visit in the source data that value should be stored here. If a visit is an amalgamation of visits from the source then use a hierarchy to choose the visit source value, such as IP -> ER-> OP. This should line up with the logic chosen to determine how visits are created."@en ;
rdfs:domain [ a owl:Class ;
owl:unionOf ( omop:BaseVisit omop:ConditionOccurrence omop:ProcedureOccurrence omop:Exposure omop:Measurement omop:Observation omop:Note omop:CareSite omop:Specimen omop:BasePerson omop:Location ) ] ;
rdfs:range xsd:string ;
omop:omop_cdm_name "care_site.care_site_source_value#251 AS str"^^xsd:string,
"condition_occurrence.condition_source_value#73 AS str"^^xsd:string,
"device_exposure.device_source_value#129 AS str"^^xsd:string,
"drug_exposure.drug_source_value#95 AS str"^^xsd:string,
"location.location_source_value#242 AS str"^^xsd:string,
"measurement.measurement_source_value#150 AS str"^^xsd:string,
"note.note_source_value#198 AS str"^^xsd:string,
"observation.observation_source_value#171 AS str"^^xsd:string,
"person.person_source_value#12 AS str"^^xsd:string,
"procedure_occurrence.procedure_source_value#112 AS str"^^xsd:string,
"provider.provider_source_value#261 AS str"^^xsd:string,
"specimen.specimen_source_value#226 AS str"^^xsd:string,
"visit_detail.visit_detail_source_value#51 AS str"^^xsd:string,
"visit_occurrence.visit_source_value#34 AS str"^^xsd:string .